Wouldn’t it make more sense to design a new, simple API and glue for doing secure DNS lookups just for certificate issuance? It could look more like dnscurve or even like HTTPS: have a new resource, say NSS, in parallel with NS. To securely traverse to a subdomain, you would query the parent for NSS and, if the record is present, you would learn an IP address and a public key hash or certificate hash that you can query via HTTPS to read the next domain. And this whole spec would say that normal HTTPS clients and OS resolvers SHOULD NOT use it. So if you mess it up, your site doesn’t go offline.
(HTTPS really needs a way to make a URL where the URL itself encodes the keying information.)